PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0065s0053.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NF-YC

Protein Properties

Length: 227aa MW: 25700.5 Da PI: 6.3024

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0065s0053.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.8	8.7e-55	44	147	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+sfw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fi+eltlrsw+h+eenkrrtl+k+diaaa+ rtd Kaladp0065s0053.1.p 44 QLQSFWANQhqeIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFIFELTLRSWNHTEENKRRTLQKNDIAAAIGRTD 133 89***999999************************************************************************* PP NF-YC 88 ifdflvdivprdel 101 ifdflvdivpr++l Kaladp0065s0053.1.p 134 IFDFLVDIVPREDL 147 *********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.36E-33	27	138	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.6E-37	59	129	IPR009072	Histone-fold
Pfam	PF00808	2.2E-21	66	129	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MPYGMPPYQP NQMTVAAPGA ASGGQHQLAH QHINPLQQQQ LQQQLQSFWA NQHQEIERVT 60 DFKNHSLPLA RIKKIMKADE DVRMISAEAP VIFARACEMF IFELTLRSWN HTEENKRRTL 120 QKNDIAAAIG RTDIFDFLVD IVPREDLKDE MLGSVPRGSI PVGAPADMLP YPYMPMQHMP 180 QVGTPGMIMG KPMMDPSMYA QQPHPYMAPQ MWPQPQQPQE QSSSDQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-59	51	144	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	122	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004494629.1	1e-120	nuclear transcription factor Y subunit C-3-like
Swissprot	Q8L4B2	8e-84	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A1S2XUA5	1e-119	A0A1S2XUA5_CICAR; nuclear transcription factor Y subunit C-3-like
STRING	XP_004494629.1	1e-120	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	1e-78	nuclear factor Y, subunit C9

Link Out ? help Back to Top
Phytozome	Kaladp0065s0053.1.p

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]