PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0066s0078.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 297aa    MW: 33066.8 Da    PI: 6.2228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0066s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.55.7e-28128188158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dg+nWrKYGqK+++g+++pr+YYrCt++   gC ++k+v+rs+edp ++ +tY+g+H++
  Kaladp0066s0078.1.p 128 VEDGFNWRKYGQKDIQGANHPRGYYRCTHRqqaGCLATKHVQRSDEDPLLFYVTYRGKHTC 188
                          58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27125189IPR003657WRKY domain
SuperFamilySSF1182906.93E-25127189IPR003657WRKY domain
SMARTSM007741.4E-37128190IPR003657WRKY domain
PROSITE profilePS5081123.284129186IPR003657WRKY domain
PfamPF031068.9E-26129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVMSGGRQEE QIWENYSSKI IVSNEIQRGV EAAKSLRILL MHHHHLNLLS NSQLSSSAQV  60
LLEEIISSSE RALSILKSCC QPGDASVNNI ADCENIHNQQ VSKKRKSTMM KFTKQVRVSL  120
ETGFDGTVED GFNWRKYGQK DIQGANHPRG YYRCTHRQQA GCLATKHVQR SDEDPLLFYV  180
TYRGKHTCYP QSETPPLLLP NRAANRSDQH YQTTCTTNTK ADADVCLPPF PDDIYLLASS  240
SSLLPEDNVG HFDSAGCCFQ QDQNSPAGIS ESQVESCPDS DDGSHVSFDL SNYVLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18128188868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614386.19e-45probable WRKY transcription factor 53
TrEMBLA0A140H8L92e-43A0A140H8L9_MANES; WRKY transcription factor 15
STRINGcassava4.1_010768m4e-44(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-32WRKY family protein