PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0066s0093.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 593aa    MW: 65458.6 Da    PI: 7.7638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0066s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12424470455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Kaladp0066s0093.1.p 424 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITELQ 470
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-5046236IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.23E-18419484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.876420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.10E-14423474No hitNo description
PfamPF000103.9E-10424470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17424483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16426475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MRMGWNEEEK ALIASVLGNR AIDYLVASLG SNDGGQLMAL GTDENLNNKL SNLVERPDSS  60
EFTWNYAIFW QLSRSRNGDM VLGWGDGCCR EAKDGEELRV ATSPGHTFEE EDESRQRMRK  120
RVLHNLHAVL GGFEEDNFVL HLDRVTDTEM FFLASMYFSF PQGQGGPGMC LKLGRHFWLP  180
DLPTSSRDYC VRSFLATTAG FRTIVLVPTD MGVIELGSVR SVPESLEWVQ SLKSLFSLRS  240
QVRTNRPSNE NILSLKSENG GKAGGNTMIF GQDLNSRRHG LFREKLAIRK NDRPWTACNS  300
QGAFQLANIQ NGSTGWAQLC SNRQVSSPGM FTSAAAAVAA NNLHDLVNGA QQDFRLNNYQ  360
SKKQIQIDFS AAPRKPVVNQ PVSAESEHSD VEASCKEAGS SQAADRRPKK RGRKPANGRD  420
EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAITYITELQ AKLKDLESER  480
IKLGNASMTG NTLTLGSSST AEVQNRVVDI ESSQDEIVVK VTCPLEAHPA NRVIQAFKDA  540
QINVVDSKLA AIDNTVFHTF VIKSSGCNQI TTERVTAALA RDSSQLELSS RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-30418485269Transcription factor MYC2
5gnj_B7e-30418485269Transcription factor MYC2
5gnj_E7e-30418485269Transcription factor MYC2
5gnj_F7e-30418485269Transcription factor MYC2
5gnj_G7e-30418485269Transcription factor MYC2
5gnj_I7e-30418485269Transcription factor MYC2
5gnj_M7e-30418485269Transcription factor MYC2
5gnj_N7e-30418485269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405413RRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081876.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A167V6C10.0A0A167V6C1_CAMSI; MYC2 trancriptor
STRINGXP_009781532.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-163bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]