PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0067s0029.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 263aa    MW: 29078.9 Da    PI: 7.0104
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0067s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.3e-183273849
                         HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          r +tfskR++gi KKA EL+v+Cda+va i+fs++g+ + y
  Kaladp0067s0029.1.p 32 DRLITFSKRKAGINKKATELCVMCDAQVAFILFSPKGNAFSY 73
                         6889*********************************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-201776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.7681777IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.09E-221890IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-151939IPR002100Transcription factor, MADS-box
PfamPF003195.4E-182973IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-153954IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-155475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MATGESSNNQ QGKKRTRGRQ KTQMRLVQRE EDRLITFSKR KAGINKKATE LCVMCDAQVA  60
FILFSPKGNA FSYGHPDVKS VVNKFLGREE YPINGDPRVI ELIDEHRRER NEELVEFYNV  120
LQHHVTEYAK HKELVKQMAE SRGDDDHMGW WDSKVEDMKT ADEVKGLCRN IVGFQEALCH  180
HMEMLQLIHQ AAPPPPANPT FRTTAFFQEP PFLPPPQAAA TGAPMALGGA GGEPSMLGAF  240
YDGGVGPSKL GNYGASSDGG GY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117GKKRTRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-26AGAMOUS-like 57