PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0067s0030.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 481aa MW: 49023.8 Da PI: 5.2029

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0067s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.1	3e-20	23	69	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k r +tfskR++gi+KKA+E+Sv+C+a+v+ i+fs+ gk y + Kaladp0067s0030.1.p 23 IEDKEDRVITFSKRKAGIFKKASEISVMCGAKVLFILFSPVGKAYSF 69 9******************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-27	13	72	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.39	13	73	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.15E-24	14	99	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.16E-30	14	88	No hit	No description
PRINTS	PR00404	3.3E-16	15	35	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-20	23	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-16	35	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-16	50	71	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MEMAAVDTKK LTKGRQKIQM RLIEDKEDRV ITFSKRKAGI FKKASEISVM CGAKVLFILF 60 SPVGKAYSFG HPSVKSVADK FLGREESDGG KQIRQILENH LNKRLQKLVL HHFVAKSELE 120 AACEQVSALA VAMKFENKGW WEANVSAMSS REEVEQVMKS LSDFEVALTN HFGNIEVQNA 180 GQGSNSNIQP EDVNNFPQMT SWTGGNNLPD VGALGGFESS FGGVSDAGLA AVGYGGALGQ 240 GSDGFSLPAA GNYGGVLGQD SGFSLPTAGN YGGFPGQGND NFSLPVAGNH GGFPGQGNDN 300 FSLPAAGNYG GTLGQDNSFS WPDAGNHGNA LGLGTGFSLP AAGNYGGALG HDNVFSLTVA 360 GNYGGALGHD SGFSLPDGGT YGGALGQGSS HFSLPAGGYG GTPGQGSDHF NFPAVGYGGS 420 GFSVPATGYG GTAGPSEGSS SGGTYNGGNF GAGLYGAGGY GGSFMDGGAP DPASDFQRPY 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MEMAAVDTKK LTKGRQKIQM RLIEDKEDRV ITFSKRKAGI FKKASEISVM CGAKVLFILF  60
SPVGKAYSFG HPSVKSVADK FLGREESDGG KQIRQILENH LNKRLQKLVL HHFVAKSELE  120
AACEQVSALA VAMKFENKGW WEANVSAMSS REEVEQVMKS LSDFEVALTN HFGNIEVQNA  180
GQGSNSNIQP EDVNNFPQMT SWTGGNNLPD VGALGGFESS FGGVSDAGLA AVGYGGALGQ  240
GSDGFSLPAA GNYGGVLGQD SGFSLPTAGN YGGFPGQGND NFSLPVAGNH GGFPGQGNDN  300
FSLPAAGNYG GTLGQDNSFS WPDAGNHGNA LGLGTGFSLP AAGNYGGALG HDNVFSLTVA  360
GNYGGALGHD SGFSLPDGGT YGGALGQGSS HFSLPAGGYG GTPGQGSDHF NFPAVGYGGS  420
GFSVPATGYG GTAGPSEGSS SGGTYNGGNF GAGLYGAGGY GGSFMDGGAP DPASDFQRPY  480
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29962.1	7e-27	AGAMOUS-like 64

Link Out ? help Back to Top
Phytozome	Kaladp0067s0030.1.p