PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0067s0047.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 180aa MW: 20220.7 Da PI: 7.0304

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0067s0047.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5.1e-18	18	71	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++t++q++ Le+ F n++++++ + +L+++l+L+ rq+ vW+qN+Ra++k Kaladp0067s0047.1.p 18 SKRRLTEDQIRLLETNFSFNKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWK 71 56789************************************************9 PP
2	HD-ZIP_I/II	100.7	1.3e-32	19	109	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 krrl+++q++lLE++F+ ++kL+++ K +l+++L+l prq+avW+qn+RAR+kt+ +E+d++a+++++ +++++n++Le+eve+L+eel+ Kaladp0067s0047.1.p 19 KRRLTEDQIRLLETNFSFNKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWKTQAMESDHKAMQSKLASVMSHNRKLEREVEKLQEELD 108 9**************************************************************************************997 PP HD-ZIP_I/II 93 e 93 + Kaladp0067s0047.1.p 109 Q 109 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-18	10	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.613	13	73	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.82E-17	14	80	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-16	15	77	IPR001356	Homeobox domain
CDD	cd00086	1.41E-15	16	73	No hit	No description
Pfam	PF00046	3.4E-15	18	71	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	48	71	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MDFLKWQDTE KPDSGKGSKR RLTEDQIRLL ETNFSFNKKL DQDLKYHLSQ QLNLPPRQIA 60 VWYQNKRARW KTQAMESDHK AMQSKLASVM SHNRKLEREV EKLQEELDQA RAMVHASSTS 120 VPAYSCAVST SGEDDGGSSF VDRSECCLDN ELYACVAGVE SRHQFLSVAG GFGAFGPSI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-33	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Kaladp0067s0047.1.p