PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0067s0120.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family DBB
Protein Properties Length: 145aa    MW: 15971.7 Da    PI: 8.834
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0067s0120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.74.9e-08333434
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                         ++C+ +e   ++lfC  ++  lC++C ++ H
  Kaladp0067s0120.2.p  3 TICDVCEGAAAILFCAADEAALCQSCDDKVH 33
                         69******99******************998 PP
2zf-B_box28.53.1e-095491437
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                          +C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Kaladp0067s0120.2.p 54 ARCDICENAPAFFYCEVDGTSLCLQCDMIVHVGgkrkH 91
                         69**************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.997147IPR000315B-box-type zinc finger
PfamPF006438.9E-7342IPR000315B-box-type zinc finger
CDDcd000211.64E-5347No hitNo description
SuperFamilySSF578454.35E-54990No hitNo description
PROSITE profilePS501199.3995196IPR000315B-box-type zinc finger
SMARTSM003363.0E-105196IPR000315B-box-type zinc finger
PfamPF006431.5E-75491IPR000315B-box-type zinc finger
CDDcd000211.77E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MRTICDVCEG AAAILFCAAD EAALCQSCDD KVHMCNKLAS RHVRVRLAAP SAVARCDICE  60
NAPAFFYCEV DGTSLCLQCD MIVHVGGKRK HGRYLILRQK VEVASLVNLR TQPHNPWTLV  120
KVTRAQKTRQ GTINKTTSPL RCRL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715554.11e-63PREDICTED: B-box zinc finger protein 18-like isoform X4
SwissprotC0SVM54e-57BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1R3HVT31e-63A0A1R3HVT3_COCAP; Zinc finger, B-box
TrEMBLA0A1R3HYV41e-63A0A1R3HYV4_9ROSI; Zinc finger, B-box
STRINGXP_009378203.11e-61(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-59DBB family protein