PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0067s0152.12.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 184aa    MW: 21049.4 Da    PI: 9.9707
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0067s0152.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34.3e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien+  rqvtfskRr+g+lKKA+ELS+LCda+v v+ifsstgkly+y+s
  Kaladp0067s0152.12.p  9 KRIENTNSRQVTFSKRRKGLLKKAKELSILCDAQVGVMIFSSTGKLYDYAS 59
                          79***********************************************86 PP
2K-box76.28.5e-2682171998
                 K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           + +++ + +++e+a L++++++Lq+ +R++  e+L sL++keLq+Le+qLe  lk iR kK+e+++++i+el++k   +q+en +L+++
  Kaladp0067s0152.12.p  82 NPSSEVKFWKNEVATLQQQLQSLQEDHRKVFTEELASLTIKELQHLENQLEMNLKCIRMKKDEIMMAKIDELRQKGSLIQQENLDLHNQ 170
                           668899********************************************************************************988 PP

                 K-box  98 l 98 
                            
  Kaladp0067s0152.12.p 171 A 171
                           5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.894161IPR002100Transcription factor, MADS-box
CDDcd002655.12E-40278No hitNo description
SuperFamilySSF554553.66E-30291IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.6E-2384170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.10287178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRGKIVIKR IENTNSRQVT FSKRRKGLLK KAKELSILCD AQVGVMIFSS TGKLYDYASK  60
ASIKATIEEY NKLKGDQLHP ANPSSEVKFW KNEVATLQQQ LQSLQEDHRK VFTEELASLT  120
IKELQHLENQ LEMNLKCIRM KKDEIMMAKI DELRQKGSLI QQENLDLHNQ AMCHIKNIQV  180
HGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18187184MEF2C
5f28_B5e-18187184MEF2C
5f28_C5e-18187184MEF2C
5f28_D5e-18187184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748927.15e-78PREDICTED: MADS-box transcription factor 23-like isoform X5
SwissprotA2RVQ51e-70AGL16_ARATH; Agamous-like MADS-box protein AGL16
SwissprotQ6EP499e-71MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8PCJ81e-76A0A1U8PCJ8_GOSHI; MADS-box transcription factor 23-like isoform X5
STRINGGLYMA13G32810.15e-76(Glycine max)
STRINGXP_010060121.11e-75(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.15e-73AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]