PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0067s0188.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 168aa    MW: 17408.2 Da    PI: 4.4131
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0067s0188.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-0586107223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C +Cgk F ++  +  H+r+H
  Kaladp0067s0188.1.p  86 PCLICGKAFHSQKAFFGHLRVH 107
                          7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-480107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-583110No hitNo description
PROSITE profilePS5015710.01485112IPR007087Zinc finger, C2H2
SMARTSM003550.008385107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAGKGDKAAG KKVAEGEEDS GAKDDNPDES VALPAKKRNR PDVAGGSSVA AAASESRVPA  60
AVVIQEPNLP AAAAVPAARG ERLPWPCLIC GKAFHSQKAF FGHLRVHPEK TYKGAFPPPT  120
FDPEGSPEPE AEQVEAAVPP VPNEEEASGV NTGIDLNVPP REEDDEE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.14e-10C2H2 family protein