PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0068s0291.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 466aa MW: 53621.7 Da PI: 8.8444

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0068s0291.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.3	3.4e-15	92	177	4	90
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHela 90 eY+ ++GF+ r++ ++ + + + + C+kegkr e+++ +++r+raetrt+Ck k+ +++e gk++++ l+leHnH l Kaladp0068s0291.1.p 92 TEYGATTGFTPRITVTQAE--KMDCRRTPCLCNKEGKRGENSDL-MTKKRERAETRTSCKVKFGIHREPsaFGKYRIYMLHLEHNHLLH 177 68**********99888..44579999*******9998.99****************998889***********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-11	92	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-27	273	366	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MEDRTSTRAR LSECRCVGEY YRIQISDQVM CSLFLFLLSS PATVFAANFC FCLPVKLLIE 60 LPKYLLHGTK MGMIPKLGMD FDSVEDAWVF RTEYGATTGF TPRITVTQAE KMDCRRTPCL 120 CNKEGKRGEN SDLMTKKRER AETRTSCKVK FGIHREPSAF GKYRIYMLHL EHNHLLHTRA 180 TIHMMPSQRH ITEIQANEIE LADASVIQVK RSHEFMSKKA GGVEGTGFIE LDHKNFLRTR 240 RQRELRYDNE KQITNIFWAD ANMRIDYGLF GDVVSFDTTY STNKESRPFG VFVGLNHHRS 300 TVIFGAAILY DETAASFKWL FQSFLNCHNQ KHPKTLFMDQ DPAMAKAIRT VMQGTYHGLC 360 TFHIMLNGIR HLGNLMKGGS SFLTHFQECM HGFSSEEAFE NAWQEMLCKY YVQGNKWLLS 420 IYKIKEKWAS CYLKNVHSLG MHSTQLSESC NAELKRHLKS SFSLA*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MEDRTSTRAR LSECRCVGEY YRIQISDQVM CSLFLFLLSS PATVFAANFC FCLPVKLLIE  60
LPKYLLHGTK MGMIPKLGMD FDSVEDAWVF RTEYGATTGF TPRITVTQAE KMDCRRTPCL  120
CNKEGKRGEN SDLMTKKRER AETRTSCKVK FGIHREPSAF GKYRIYMLHL EHNHLLHTRA  180
TIHMMPSQRH ITEIQANEIE LADASVIQVK RSHEFMSKKA GGVEGTGFIE LDHKNFLRTR  240
RQRELRYDNE KQITNIFWAD ANMRIDYGLF GDVVSFDTTY STNKESRPFG VFVGLNHHRS  300
TVIFGAAILY DETAASFKWL FQSFLNCHNQ KHPKTLFMDQ DPAMAKAIRT VMQGTYHGLC  360
TFHIMLNGIR HLGNLMKGGS SFLTHFQECM HGFSSEEAFE NAWQEMLCKY YVQGNKWLLS  420
IYKIKEKWAS CYLKNVHSLG MHSTQLSESC NAELKRHLKS SFSLA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874687.1	1e-145	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9I6R5	1e-138	A0A2N9I6R5_FAGSY; Uncharacterized protein
STRING	XP_004305434.1	1e-133	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-59	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0068s0291.1.p