PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0068s0350.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 104aa MW: 11486.9 Da PI: 4.0194

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0068s0350.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	40.4	8.2e-13	1	41	61	101
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +vyeA+ar+rdPvyG++g i +lq+q+++l+ ela++++e+ Kaladp0068s0350.1.p 1 MVYEANARLRDPVYGCAGAICHLQRQVSELQGELAKAQAEI 41 69**********************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	7.4E-11	1	38	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	9.457	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MVYEANARLR DPVYGCAGAI CHLQRQVSEL QGELAKAQAE IVAIQLQKSN LLTLICMDDQ 60 DQHMFSYGQC VDDTNQNVSF DELYGIGSFM DSSYANSLES LWA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017246117.1	6e-30	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-24	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A162A993	1e-28	A0A162A993_DAUCS; Uncharacterized protein
STRING	AES67410	1e-28	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-27	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Kaladp0068s0350.1.p