PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0069s0102.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 158aa    MW: 17542.7 Da    PI: 7.3731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0069s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.5e-201567156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         s+y+G+r+++ +g+++AeIrdps ng  +r++lg+f taeeAa+a+++a+ +++g+
  Kaladp0069s0102.1.p 15 SRYRGIRRRP-WGKFAAEIRDPSRNG--ARVWLGTFETAEEAARAYDRAAYAFRGH 67
                         79********.**********98887..*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-141567IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-241575IPR016177DNA-binding domain
CDDcd000182.08E-191575No hitNo description
Gene3DG3DSA:3.30.730.101.4E-311675IPR001471AP2/ERF domain
SMARTSM003801.8E-351680IPR001471AP2/ERF domain
PROSITE profilePS5103224.9871674IPR001471AP2/ERF domain
PRINTSPR003679.7E-121728IPR001471AP2/ERF domain
PRINTSPR003679.7E-124056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDQGRGGGRQ GSSESRYRGI RRRPWGKFAA EIRDPSRNGA RVWLGTFETA EEAARAYDRA  60
AYAFRGHLAI LNFPNEHHYQ SQEGDHGRPS SRRSSGNNNI SSSSSPSSSS ATNHHHHHPE  120
NYSSSQTGPD GEVFEFEYLD NTLLEDLLGY QGQGKNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3011431114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022959671.11e-47ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5CNM26e-46A0A2P5CNM2_PARAD; AP2/ERF transcription factor
STRINGXP_006480088.12e-44(Citrus sinensis)
STRINGXP_006443851.12e-44(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]