PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0070s0173.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 420aa    MW: 46357.1 Da    PI: 8.5372
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0070s0173.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-065476123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C++C++ F r  nL+ H r+H
  Kaladp0070s0173.2.p 54 YVCEICNQGFQRDQNLQMHRRRH 76
                         9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-55376No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975476IPR007087Zinc finger, C2H2
SMARTSM003550.00525476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035598104134IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.57E-5135160No hitNo description
SMARTSM00355130140167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MLDPQASNNN NTAASTSSFQ NGLSSSKRKR RPAGTPDAEV VALSPKTLLE SDRYVCEICN  60
QGFQRDQNLQ MHRRRHKVPW KLVRREDSNK NGSGSNQEAK KRVYVCPEPS CLHHDASHAL  120
GDLVGIKKHF RRKHSNYKQW VCDKCCKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES  180
FIEHQDACTI KRVDPPQHQL QLPAAAFQPA CSSSTSPSGC GETAGLAMSH FQRVMQQAPK  240
AIQQQEPSRS HYLKQHNLLE LQLLPSSSNT MTSPDNDKNE TTLLRLSVGT FGGGGGQPRC  300
EEEATILRVA VAEKEYAEEV RRRSKRELEL AELEFENAKR IRQQALGELE RAKALRDEAV  360
KKISSTIMEI TCQACQQQFQ TSNVVAAPPL LPLAEESSLA VSFMSSAASE GDGGGGHQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-16138188555Zinc finger protein JACKDAW
5b3h_F1e-16138188555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467178.11e-162PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_016708157.11e-162PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_021685984.11e-162protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X71e-137IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A2N9F2X31e-162A0A2N9F2X3_FAGSY; Uncharacterized protein
STRINGGorai.002G171100.11e-161(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-114indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]