PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0015.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GeBP
Protein Properties Length: 283aa    MW: 31956.8 Da    PI: 10.2092
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57397.31.5e-3068159397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                           qrl+see ei lL+G++df++kt k+ +dd+d+fye+vkk++++ +sksql++K+++LK+K++k+v+k+k+g+e    k+ d+k ++ls
  Kaladp0071s0015.1.p  68 GQRLFSEESEIELLKGMVDFADKTRKNFKDDLDGFYEYVKKELDVAFSKSQLLTKVKNLKRKYTKNVEKVKKGEE---LKPLDKKLYDLS 154
                          69*******************************************************************999999...79********** PP

               DUF573  93 kkiWg 97 
                           kiWg
  Kaladp0071s0015.1.p 155 GKIWG 159
                          ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-2569159IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKKANLKSAK VPYMKSTPKA GAKREVEEKE VVVVAVPAAV SKDGKKRTKS ETVASEEKQQ  60
LEDSKKQGQR LFSEESEIEL LKGMVDFADK TRKNFKDDLD GFYEYVKKEL DVAFSKSQLL  120
TKVKNLKRKY TKNVEKVKKG EELKPLDKKL YDLSGKIWGG GGAVKSVSNR GIDVAGKSNG  180
KRKRVRKEHI FKNEEEMCDA TTKEAEVDSL SLIELMKSSA GYVLNEELIK RGWNSISKDK  240
RMKMNEQWES LLLDEVKLNL RRLELARLHG QLVLDAFGAS SH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-20DNA-binding storekeeper protein-related transcriptional regulator