PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0071s0096.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 491aa MW: 54567.6 Da PI: 6.6988

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0071s0096.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.2	1.6e-21	111	155	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq+t++kR+ngilKKA+EL +LCd+++++++fs+tgk Kaladp0071s0096.1.p 111 KRLENSNSRQTTYAKRKNGILKKANELAILCDIDILLLMFSPTGK 155 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-30	103	162	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.292	103	155	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-25	104	196	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.22E-25	104	183	No hit	No description
PRINTS	PR00404	2.8E-17	105	125	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-19	113	156	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-17	125	140	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-17	140	161	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MEEIRCEQKL PLSSPVRAHS SVVFSAGVVI YRLRGPGPFT YGPLRPNKNA GPTRVVKWAN 60 GGGEEMEERF VRRWRFCDVP DSRVPIDDRF SWAPGLPEQA YIMGRVKLKI KRLENSNSRQ 120 TTYAKRKNGI LKKANELAIL CDIDILLLMF SPTGKPSLCC GKRGVEEVIA KFAQLTPQER 180 AKRQLEGLEA LKKTFKKLDH DVNIQEFLGT STQTVEGMTE QMVQIRAELE ETQQRLSYWS 240 DPSKIESLDH LGQMEASLGK SLDAIRAHKE NLEKQQLILQ ETTAQIQNEM QMPYRVSLEQ 300 HYQPLPWIAP NEAPHIPLSE DPNLIPQREI ECSGSSSFAT YSTYLDLCKR AQSGAFRDDS 360 GFLSELGRSS PQLISGQFSF PSYSANLLAS DAKYPADTNL QNSVHLEPQP TFGTHPAFDP 420 NHSSWASAAG PFSDTMHSSW ASACGPLADV THGVWGSTSG PCSATTANSN WASPGSYPVA 480 LFDEHYQLPH *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MEEIRCEQKL PLSSPVRAHS SVVFSAGVVI YRLRGPGPFT YGPLRPNKNA GPTRVVKWAN  60
GGGEEMEERF VRRWRFCDVP DSRVPIDDRF SWAPGLPEQA YIMGRVKLKI KRLENSNSRQ  120
TTYAKRKNGI LKKANELAIL CDIDILLLMF SPTGKPSLCC GKRGVEEVIA KFAQLTPQER  180
AKRQLEGLEA LKKTFKKLDH DVNIQEFLGT STQTVEGMTE QMVQIRAELE ETQQRLSYWS  240
DPSKIESLDH LGQMEASLGK SLDAIRAHKE NLEKQQLILQ ETTAQIQNEM QMPYRVSLEQ  300
HYQPLPWIAP NEAPHIPLSE DPNLIPQREI ECSGSSSFAT YSTYLDLCKR AQSGAFRDDS  360
GFLSELGRSS PQLISGQFSF PSYSANLLAS DAKYPADTNL QNSVHLEPQP TFGTHPAFDP  420
NHSSWASAAG PFSDTMHSSW ASACGPLADV THGVWGSTSG PCSATTANSN WASPGSYPVA  480
LFDEHYQLPH *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018846119.1	1e-122	PREDICTED: agamous-like MADS-box protein AGL30 isoform X4
Swissprot	Q1PFA4	6e-94	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2I4GQF3	1e-120	A0A2I4GQF3_JUGRE; agamous-like MADS-box protein AGL30 isoform X4
STRING	XP_004298422.1	1e-116	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	3e-85	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Kaladp0071s0096.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]