PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0096.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 389aa    MW: 42997.3 Da    PI: 6.2362
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0096.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-21953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr en+  rq+t++kR+ngilKKA+EL +LCd+++++++fs+tgk
  Kaladp0071s0096.2.p  9 KRLENSNSRQTTYAKRKNGILKKANELAILCDIDILLLMFSPTGK 53
                         689****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.292153IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-26294IPR002100Transcription factor, MADS-box
CDDcd002663.80E-26281No hitNo description
PRINTSPR004041.5E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGRVKLKIKR LENSNSRQTT YAKRKNGILK KANELAILCD IDILLLMFSP TGKPSLCCGK  60
RGVEEVIAKF AQLTPQERAK RQLEGLEALK KTFKKLDHDV NIQEFLGTST QTVEGMTEQM  120
VQIRAELEET QQRLSYWSDP SKIESLDHLG QMEASLGKSL DAIRAHKENL EKQQLILQET  180
TAQIQNEMQM PYRVSLEQHY QPLPWIAPNE APHIPLSEDP NLIPQREIEC SGSSSFATYS  240
TYLDLCKRAQ SGAFRDDSGF LSELGRSSPQ LISGQFSFPS YSANLLASDA KYPADTNLQN  300
SVHLEPQPTF GTHPAFDPNH SSWASAAGPF SDTMHSSWAS ACGPLADVTH GVWGSTSGPC  360
SATTANSNWA SPGSYPVALF DEHYQLPH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846119.11e-123PREDICTED: agamous-like MADS-box protein AGL30 isoform X4
SwissprotQ1PFA42e-95AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A2I4GQF31e-122A0A2I4GQF3_JUGRE; agamous-like MADS-box protein AGL30 isoform X4
STRINGXP_004298422.11e-118(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.28e-87AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]