PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0106.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 292aa    MW: 31839.8 Da    PI: 8.9837
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.31.8e-284493357
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                         +  YkeC+kNhAa++Ggha+DGCgE+mp         +lkCaACgCHRnFHR ++
  Kaladp0071s0106.1.p 44 TSSYKECQKNHAAAIGGHALDGCGEYMPP-----PLPSLKCAACGCHRNFHRLDT 93
                         678*************************9.....5789**************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-154490IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-234691IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.6074792IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.7E-264791IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.58E-17179243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27180243IPR009057Homeodomain-like
TIGRFAMsTIGR015653.4E-26185241IPR006455Homeodomain, ZF-HD class
CDDcd000860.00873186243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDSGMVAMKM SSDQQAQAQQ LCFKALSFSG KKERSRNEQR EHETSSYKEC QKNHAAAIGG  60
HALDGCGEYM PPPLPSLKCA ACGCHRNFHR LDTPSAAVRV EARTIAAAPI FSHPPRRFSS  120
ASPSSSSSPS RSEAPISSIY PSAPQILMSL SSGVEMTSGH AITPATAPDP IKLCFDEDVK  180
TDKPKKRFRT KFSAEQKEKM RRFAEGFGWR MQRTDDDAVK RFCDEIGVCR SVLKVWMHNN  240
RSRNLMGINR NNNFEYNGGG LTGGRLDSEE MHVVGNNGGI QSTDGGSSSS V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211862421874ZF-HD homeobox family protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-44zinc finger homeodomain 1