PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0071s0191.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 229aa MW: 25649.1 Da PI: 6.6304

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0071s0191.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.7	6.6e-11	103	133	1	31
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas 31 +r++h ++Er+RR+++N+ ++ Lr+l+P+++ Kaladp0071s0191.1.p 103 QRMTHIAVERNRRKQMNEYLAVLRTLMPSSY 133 79***************************73 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.58E-8	101	136	No hit	No description
SuperFamily	SSF47459	5.82E-9	101	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-9	101	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.925	102	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-8	103	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MALDAVVFPQ DPFGHNFTFK DYFQGIMEDE LSGGINYNLG VVDNIDTDSW SYDQLGFHKA 60 QEDKQSLLTT APEPSPAKDP PVTARRKRRR TKSCKNKEEV ENQRMTHIAV ERNRRKQMNE 120 YLAVLRTLMP SSYAQRGRHG AAEIEVTMVE SHANVKILAK RCSGQLVKLV AAFQSLSLTF 180 QHLSVSSLDH MVMYSVSVKV EEGCELNSVD EIAAAVNQML RNIDESLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	89	RKRRR
2	85	90	RKRRRT
3	103	114	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007047845.2	2e-61	PREDICTED: transcription factor bHLH96 isoform X2
Swissprot	Q9C7T4	8e-29	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A061DIC4	2e-61	A0A061DIC4_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3
STRING	XP_007136288.1	4e-51	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0071s0191.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]