PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0214.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 363aa    MW: 39354.9 Da    PI: 6.5187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0214.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20170220256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+  l+ge
  Kaladp0071s0214.1.p 170 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFMLRGE 220
                          59******9.**********965...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.38E-34169229No hitNo description
SuperFamilySSF541713.86E-23170227IPR016177DNA-binding domain
PROSITE profilePS5103222.879170227IPR001471AP2/ERF domain
SMARTSM003803.3E-39170233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32170228IPR001471AP2/ERF domain
PRINTSPR003673.5E-11171182IPR001471AP2/ERF domain
PfamPF008472.3E-14171220IPR001471AP2/ERF domain
PRINTSPR003673.5E-11193209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAALMDLYSS NRVGSDPFMG GELMEALEPF MRSAPPPPSS SPPSSSSSSS FANPIYSSSS  60
SSSIQPSFTH PQLYPNPNVF APGFDSQLDQ HSFFNSSSSS FPASSQFQMF QSYQSQYDPL  120
VNSFPPPCTS VSAPVSNLAR ESQQNYVMSF LSAKPVQMKL SASPAKPTKL YRGVRQRHWG  180
KWVAEIRLPK NRTRLWLGTF DTAEEAALAY DKAAFMLRGE FARLNFPNLK HSGSVIRGEF  240
GEFKPLHSSV DAKLQAICDE MSEAQKQGKS TGRRKSSKAA ALAVNGPPPP AAEDTTGGDG  300
FVCKAENLSN NSGSDGSAGS SPISELTFPE FDEPAGWNWN PMSENFMLQK HPSEIDWASI  360
LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20169227160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20169233469ATERF1
3gcc_A2e-20169233469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296328e-38KP229632.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF09) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021638221.18e-92ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A3Q8TB034e-90A0A3Q8TB03_FRAAN; Transcription factor ERF5
TrEMBLD5L1063e-90D5L106_MALDO; AP2 domain class transcription factor
STRINGXP_008362598.11e-90(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-61related to AP2 4