PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0071s0216.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 189aa MW: 20907.5 Da PI: 9.0042

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0071s0216.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.3	1.8e-15	58	109	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i A++Y+k+L+ Kaladp0071s0216.1.p 58 QRMTHIAVERNRRKQMNEYLAVLRTLMPSS---YAQRGDQASIIGGAINYVKELE 109 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.11E-19	56	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-14	56	113	No hit	No description
PROSITE profile	PS50888	16.031	57	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-12	58	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-16	58	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-10	63	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MKFTTPDGLG IKESNGEDKQ SLLTTAPEPS PAKDPPVAAR RKRRRTKACK NKEEVENQRM 60 THIAVERNRR KQMNEYLAVL RTLMPSSYAQ RGDQASIIGG AINYVKELEQ LLQTLEAQKS 120 TKNPKQQDDH HSPFANFFTF PQYTAGATAA TPTSTTDGDD EVAAEGRHGA AEIEVTMVES 180 HANVKILAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	44	RKRRR
2	40	45	RKRRRT
3	58	69	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272971.1	1e-66	PREDICTED: transcription factor bHLH96
Swissprot	Q9SK91	2e-51	BH094_ARATH; Transcription factor bHLH94
TrEMBL	A0A1U8B9D6	2e-65	A0A1U8B9D6_NELNU; transcription factor bHLH96
STRING	XP_010272971.1	4e-66	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	6e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0071s0216.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]