PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0229.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 524aa    MW: 57181.7 Da    PI: 8.7819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0229.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154767323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++C+k F r  nL+ H r H
  Kaladp0071s0229.3.p 47 CEICNKGFQRDQNLQLHRRGH 67
                         *******************88 PP
2zf-C2H2110.0013122144123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  ks+ k H + +
  Kaladp0071s0229.3.p 122 WKCDKCPKKYAVKSDWKAHSKIC 144
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-54467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-74467No hitNo description
PROSITE profilePS5015710.8244567IPR007087Zinc finger, C2H2
SMARTSM003550.114567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SMARTSM0035511087117IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4110143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-7117142No hitNo description
SMARTSM0035565122149IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MMSQATQPSA SSSALKRKRN LPGTPDPDSE VVALSPTSLM ATNRFLCEIC NKGFQRDQNL  60
QLHRRGHNLP WKLKQRSNKE VVKKKVYICP EKSCVHHDPS RALGDLTGIK KHFSRKHGEK  120
KWKCDKCPKK YAVKSDWKAH SKICGTKEHK CDCGTLFSRK DSFITHRAFC TAVVDQSGSR  180
FASSVAAGTN NPLSLRNDFL SENLGIPQGV DTNQFSGGGF YPELSTSFHS YGHVSNSTDG  240
SKSVRHIIPQ WLDQHPALNA SAHLLMGNLA GNLSHELLLQ NAGQVNLFGS SSSSQAPWLN  300
KCTDQSAFGG ANMSSLDQIL GNTSGGSSGM MQVKREDEIL SNADFVENMT TSLYNPNNLS  360
HQQQQAITSN QSAADQFLSS FYGRSNSNSL GLISSGASNG QVSFAGNNNN GFVDNSSFCI  420
ISRPPPPVIK DSDNTNASLN HHHQMLLHEA VAAGRAKPPE TNPNAIKQQQ AESSQTRDFL  480
GVGRNEIMRE EQFQLAMVSD QQFGSAAAGA ESDMSHYNQQ WKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-30118183367Zinc finger protein JACKDAW
5b3h_F8e-30118183367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-97C2H2-like zinc finger protein