PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0229.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 547aa    MW: 59655.3 Da    PI: 8.436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0229.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000167090323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++C+k F r  nL+ H r H
  Kaladp0071s0229.4.p 70 CEICNKGFQRDQNLQLHRRGH 90
                         *******************88 PP
2zf-C2H210.90.0014145167123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  ks+ k H + +
  Kaladp0071s0229.4.p 145 WKCDKCPKKYAVKSDWKAHSKIC 167
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.35E-76790No hitNo description
SMARTSM003550.116890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8246890IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355110110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.35E-7140165No hitNo description
SMARTSM0035565145172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MMSQGLSPVP SSFLGFIEDQ IQNPDSSNTP ATQPSASSSA LKRKRNLPDP DSEVVALSPT  60
SLMATNRFLC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS NKEVVKKKVY ICPEKSCVHH  120
DPSRALGDLT GIKKHFSRKH GEKKWKCDKC PKKYAVKSDW KAHSKICGTK EHKCDCGTLF  180
SRKDSFITHR AFCTAVVDQS GSRFASSVAA GTNNPLSLRN DFLSENLGIP QGVDTNQFSG  240
GGFYPELSTS FHSYGHVSNS TDGSKSVRHI IPQWLDQHPA LNASAHLLMG NLAGNLSHEL  300
LLQNAGQVNL FGSSSSSQAP WLNKCTDQSA FGGANMSSLD QILGNTSGGS SGMMQVKRED  360
EILSNADFVE NMTTSLYNPN NLSHQQQQAI TSNQSAADQF LSSFYGRSNS NSLGLISSGA  420
SNGQVSFAGN NNNGFVDNSS FCIISRPPPP VIKDSDNTNA SLNHHHQMLL HEAVAAGRAK  480
PPETNPNAIK QQQAESSQTR DFLGVGRNEI MREEQFQLAM VSDQQFGSAA AGAESDMSHY  540
NQQWKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-29141206367Zinc finger protein JACKDAW
5b3h_F3e-29141206367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-93C2H2-like zinc finger protein