PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0243.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 506aa    MW: 54965.9 Da    PI: 6.3582
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0243.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17159208155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Kaladp0071s0243.2.p 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
                          78*******************......55*************************98 PP
2AP241.63.2e-13251301155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ + +g
  Kaladp0071s0243.2.p 251 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEIEAARAYDRAAIRCNG 301
                          79********.7******...5...334336**********99**********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-9159208IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-16159217IPR016177DNA-binding domain
SMARTSM003805.2E-33160222IPR001471AP2/ERF domain
PROSITE profilePS5103218.017160216IPR001471AP2/ERF domain
CDDcd000181.28E-11160215No hitNo description
Gene3DG3DSA:3.30.730.101.3E-17160216IPR001471AP2/ERF domain
CDDcd000181.56E-25251311No hitNo description
SuperFamilySSF541713.27E-16251310IPR016177DNA-binding domain
PfamPF008477.0E-9251301IPR001471AP2/ERF domain
SMARTSM003808.1E-32252315IPR001471AP2/ERF domain
PROSITE profilePS5103214.974252309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15252309IPR001471AP2/ERF domain
PRINTSPR003672.5E-5253264IPR001471AP2/ERF domain
PRINTSPR003672.5E-5291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MMSGGGEGGL VLDLNLSVGV SSESTRSGES LLLMSEKFTG GSGTQMDESG NSNSSVVNAV  60
EADDDSCSTR AVDMFAYFDA SKDGDGDVRT DVMTKQLFPM METGSVDEAD GVVEGHGSRN  120
WIDLSGNYGS IPEVQMVRQQ AQQQQVAKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGPD ADINFSFSDY EEDLKQTKNL SKEEFVQILR  240
RRSNGFSRGS SKFRGVTLHK CGRWEARMGQ LLGKKYIYLG LFDTEIEAAR AYDRAAIRCN  300
GKEALTNFEP STYEEELISM ATGTGCDYEL DLSLGISIPS PVRATVQGSG AVPAQSCVGS  360
YDAHSRNRPW VLNSTTPDGL FKGPTVASEN LSPNIRGYPL LYNSEDRAPA KTNAVHHTPG  420
FPTSPWQSHG HVTYPPVSLF SSTSAAASSG FQSPVPPALP TNPFSSPNLH FQLMASTGQS  480
ASPSNLQCQM KPPRSSFITE DVNNF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284749.21e-148PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
TrEMBLA0A438KP411e-147A0A438KP41_VITVI; Ethylene-responsive transcription factor RAP2-7
TrEMBLF6GTW61e-147F6GTW6_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03590.t011e-148(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.37e-89related to AP2.7