PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0071s0249.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 115aa MW: 12784.8 Da PI: 10.2386

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0071s0249.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.8	1.8e-13	17	68	11	57
HHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 11 qleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 le+ e+++ r+psa ++ +++++l +L+ ++V++WFqN++a++k+ Kaladp0071s0249.1.p 17 DLEIYMEVYKGgLRNPSAGQIHQITAHLssfgKLQGKNVFYWFQNHKARDKQ 68 5677788999889*************************************97 PP
2	Wus_type_Homeobox	81.2	1.3e-26	16	69	11	64
Wus_type_Homeobox 11 eQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + ++i e+yk Glr+P++ +i++ita+L+++Gk+++kNVfyWFQN+kaR++q+ Kaladp0071s0249.1.p 16 TDLEIYMEVYKGGLRNPSAGQIHQITAHLSSFGKLQGKNVFYWFQNHKARDKQR 69 6789999**********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	3.2E-11	16	68	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.94E-7	29	72	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-4	31	68	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MPRCSSVHGN QMETGTDLEI YMEVYKGGLR NPSAGQIHQI TAHLSSFGKL QGKNVFYWFQ 60 NHKARDKQRL KKKKLLMVKQ HPQSCCYYAS LSSQMPATRQ GSVTVDAAAL IIGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251286.1	4e-23	WUSCHEL-related homeobox 3
Refseq	XP_015057299.1	4e-23	WUSCHEL-related homeobox 3-like
Refseq	XP_025809937.1	6e-23	putative WUSCHEL-related homeobox 2
Swissprot	A2XZR3	4e-23	WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
TrEMBL	A0A287ELV7	2e-22	A0A287ELV7_HORVV; Uncharacterized protein
STRING	OPUNC05G01220.1	5e-23	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	1e-21	WOX family protein

Link Out ? help Back to Top
Phytozome	Kaladp0071s0249.1.p