PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0331.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 252aa    MW: 27928 Da    PI: 10.4694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0331.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-1356104255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +++h+e+E rRR+riN+ + +Lr +lP+ +      K +Ka+ L ++v+++k+Lq
  Kaladp0071s0331.1.p  56 KKSHSEAESRRRKRINDHLTTLRGILPSkL------KTDKATLLMETVQHVKELQ 104
                          789*************************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.25E-1052106No hitNo description
PROSITE profilePS5088814.59654103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1354106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1255110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-1056104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-760109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.2E-7150207No hitNo description
CDDcd048730.00257151214No hitNo description
SuperFamilySSF550212.29E-5151209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQNDPFDNIL QNTVGQPTDM DKFVFPQRAS SFMAAPMTTA MMMATRFATN KPKAEKKSHS  60
EAESRRRKRI NDHLTTLRGI LPSKLKTDKA TLLMETVQHV KELQQKFAEV AGSGGEGGMK  120
PLLPTETDTV SVSRCQDEEV GEKNNLFVKA TVCCEDRPDL NRDLVQLVRS VQGKITRAEM  180
ASVGGRTKMV MTLKLTGGGG EEELRRVRRG LMAVVENRAS GRIGHSKRGR FVMPNRTDGY  240
GGMSNYNYSL R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107684.13e-55transcription factor bHLH30
TrEMBLW9RXF47e-54W9RXF4_9ROSA; Uncharacterized protein
STRINGXP_010107684.11e-54(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-31bHLH family protein