PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0350.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-other
Protein Properties Length: 167aa    MW: 18966.2 Da    PI: 9.1535
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.47.6e-0618304456
                         HHHHHHHHHHHHH CS
             Homeobox 44 VkvWFqNrRakek 56
                         V +WFqNrRa+ k
  Kaladp0071s0350.1.p 18 VAIWFQNRRARLK 30
                         99*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.568132IPR001356Homeobox domain
SuperFamilySSF466891.1E-5642IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-51739IPR009057Homeodomain-like
PfamPF021833.7E-163272IPR003106Leucine zipper, homeobox-associated
PfamPF036703.3E-53587IPR022788Uncharacterised protein family UPF0184
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKTKKKKFSD EQIRSLEVAI WFQNRRARLK PKQIEREYDS LKASYDALAC KFESLKKENQ  60
SLNSQLRTLI EKFERVRMDI NGRMSEQTNA SASTEKVGDQ QQGGGSGNNG EQKLSVVEKL  120
SGSGNIPMEM MYSSPFASSA NSWSSEYSCF LDQSKSCGSS QWWEFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12432RRARLKPKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-17homeobox 7