PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0071s0396.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 366aa MW: 41100.1 Da PI: 7.7172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0071s0396.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	2e-10	227	275	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka++Le+ ++Y++sLq Kaladp0071s0396.1.p 227 SSHSLAERARREKISQRMRLLQELVPGC----NKVTGKAAMLEEIINYVQSLQ 275 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	221	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.59E-10	222	279	No hit	No description
PROSITE profile	PS50888	15.535	224	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-17	224	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-8	227	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-10	230	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MSDYDASSGS RSQNDRTNNS MKFSCSGWDP FVFMSQSANL GAASSHLAAN QGTSSSFHHH 60 RSSSDAVREL LPCVESLLTC PSEMVGPFGV YPNMEEIAST DCFRRCQPKM GTGSTTMFVC 120 SPTADCADDC EDYGDGPNRR KRNFDSFKVN PPENVGEVEQ QMNHQPGRGS ALRKERNHKK 180 LSIGRHLCDG LDEKQPHSNV KESSQVRKES SKEEYVHVRA RRGQATSSHS LAERARREKI 240 SQRMRLLQEL VPGCNKVTGK AAMLEEIINY VQSLQQQVEL LSMKLAAVNP QLNIHCIEQV 300 VSNDVSCNMT SYLYNQHPAA QFHHWTPVIS NNISSAMFHF YYRLPKFLSW RQDFTDNVLQ 360 NLPPM*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MSDYDASSGS RSQNDRTNNS MKFSCSGWDP FVFMSQSANL GAASSHLAAN QGTSSSFHHH  60
RSSSDAVREL LPCVESLLTC PSEMVGPFGV YPNMEEIAST DCFRRCQPKM GTGSTTMFVC  120
SPTADCADDC EDYGDGPNRR KRNFDSFKVN PPENVGEVEQ QMNHQPGRGS ALRKERNHKK  180
LSIGRHLCDG LDEKQPHSNV KESSQVRKES SKEEYVHVRA RRGQATSSHS LAERARREKI  240
SQRMRLLQEL VPGCNKVTGK AAMLEEIINY VQSLQQQVEL LSMKLAAVNP QLNIHCIEQV  300
VSNDVSCNMT SYLYNQHPAA QFHHWTPVIS NNISSAMFHF YYRLPKFLSW RQDFTDNVLQ  360
NLPPM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	3e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0071s0396.1.p