PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0407.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 384aa    MW: 43174.8 Da    PI: 6.4645
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0407.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-093103452055
                          HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Kaladp0071s0407.1.p 310 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 345
                          4679*****************************885 PP
2ELK35.42.2e-12265286122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          +LK +L++KYsgyL+sLkqE+s
  Kaladp0071s0407.1.p 265 DLKIHLMKKYSGYLSSLKQELS 286
                          69******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.3E-19117161IPR005540KNOX1
PfamPF037908.1E-21118160IPR005540KNOX1
SMARTSM012562.4E-26170221IPR005541KNOX2
PfamPF037911.4E-23175219IPR005541KNOX2
PfamPF037893.9E-9265286IPR005539ELK domain
PROSITE profilePS5121310.72265285IPR005539ELK domain
SMARTSM011884.7E-6265286IPR005539ELK domain
PROSITE profilePS5007113.167285348IPR001356Homeobox domain
SuperFamilySSF466891.2E-19286360IPR009057Homeodomain-like
SMARTSM003892.6E-12287352IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27290349IPR009057Homeodomain-like
CDDcd000864.91E-12297349No hitNo description
PfamPF059201.5E-16305344IPR008422Homeobox KN domain
PROSITE patternPS000270323346IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEEYNNQLRE NNSSPRANFL YANPASAASS YGIHSSTGSR STGANAASVA GQSGGSSSAF  60
QQHLYFHPDQ HNSGVKSELA ATTSQFLGQK FHHPLGIIRE NCGNERGDHS QENDEAAAIK  120
AKIMSHPQCS NLLQAYMDCQ KVGAPPQVVA QLVAAREEFE NRQRSSSSSS GKDASRDPEL  180
DQFMEAYYDM LVKYREELTR PLQEAMDFMR RIESQLNMLG AGPIKSYNPS DEKSSEGVGS  240
SEEEGDNGDE TAQLPEIDPH AEDRDLKIHL MKKYSGYLSS LKQELSKKRK KGKLPKEARQ  300
KLLSWWELHY KWPYPSETEK VALAESTGLD QKQINNWFIN QRKRHWKPSE DIQFMVMDGM  360
HHQNYMDGHY QLGPDHSSFH MGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280289LKQELSKKRK
2286290KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903746.11e-159homeobox protein knotted-1-like 2
SwissprotO041351e-147KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLB1P1S10.0B1P1S1_9MAGN; Knotted-like homeobox protein
STRINGEOY156241e-155(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-100KNOTTED-like from Arabidopsis thaliana