PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0445.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 385aa    MW: 42953.5 Da    PI: 7.1603
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0445.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18164214256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Kaladp0071s0445.1.p 164 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEDAAMAYDRQAFKLRGE 214
                          59******9.**********966...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-32163222No hitNo description
Gene3DG3DSA:3.30.730.101.0E-31164222IPR001471AP2/ERF domain
PROSITE profilePS5103222.879164221IPR001471AP2/ERF domain
SMARTSM003801.8E-38164227IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23164222IPR016177DNA-binding domain
PfamPF008472.9E-12165214IPR001471AP2/ERF domain
PRINTSPR003676.1E-11165176IPR001471AP2/ERF domain
PRINTSPR003676.1E-11187203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MATSSDKDLD SYGRPLRKGR SPDRQNPYQI HNNSIMLAQQ TPLHQSSSSS SSSSRLVFPF  60
PLDASQPQFN QQQQQQYSSI PYYPPQTQQH QMISFAAAHQ QQRSGGDTAA VTPQQQQHML  120
QHWSDSLNLS PRGKMLMMMN RLGVQEGTSA LPRPQLQPIH TTKLYRGVRQ RHWGKWVAEI  180
RLPRDRTRLW LGTFDTAEDA AMAYDRQAFK LRGENARLNF PERFLSKERV ISTAPSSPSS  240
APATSTNPPP PNVVPDSKLE DCFKAEERDL SEVLNNSTST ETADCASNNN EFVWGDMAEA  300
WYNAIPAGWG PESPVWDNLD ATNQLLLHPN NLPPSTFSQH NEQIAELSVA CELRRQLSNL  360
GAAGSTSSSS SNSTSFLWNH PHST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-21163228470ATERF1
3gcc_A8e-21163228470ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972100.15e-91PREDICTED: ethylene-responsive transcription factor ERF053
TrEMBLA0A061E4175e-92A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGEOX993828e-93(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.15e-59ERF family protein