PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0072s0040.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 235aa    MW: 26196.3 Da    PI: 8.1465
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0072s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.42.2e-30128854129
                  NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          + +ewyfFs rd+kyatg r+nrat sgyWkatgkd+++l+  ++ + g++ktLvfyk+rap+g kt W+mhe+rle
  Kaladp0072s0040.1.p  12 NATEWYFFSFRDRKYATGFRTNRATMSGYWKATGKDRTILDPsDRCVAGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 88 
                          567**************************************9666779**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.2671106IPR003441NAC domain
SuperFamilySSF1019412.48E-3710106IPR003441NAC domain
PfamPF023651.7E-141587IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MCKNNAEVGK LNATEWYFFS FRDRKYATGF RTNRATMSGY WKATGKDRTI LDPSDRCVAG  60
MRKTLVFYKN RAPNGIKTGW IMHEFRLETP HFPPKEDWVL CRVFHKAKIS ASSNHGCCEP  120
HAAMLPCVIS QNQISSLSST QNGNMVSNHK ALLNNHNNHY GAVFKFGAQE EKNPATAASS  180
VTEMNSVDDG RGEGRGSYDF LWGINLEEIN SLAPSDEGGT LQDHQMDANS LSFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-271510672165NO APICAL MERISTEM PROTEIN
1ut4_B8e-271510672165NO APICAL MERISTEM PROTEIN
1ut7_A8e-271510672165NO APICAL MERISTEM PROTEIN
1ut7_B8e-271510672165NO APICAL MERISTEM PROTEIN
3swm_A9e-271510675168NAC domain-containing protein 19
3swm_B9e-271510675168NAC domain-containing protein 19
3swm_C9e-271510675168NAC domain-containing protein 19
3swm_D9e-271510675168NAC domain-containing protein 19
3swp_A9e-271510675168NAC domain-containing protein 19
3swp_B9e-271510675168NAC domain-containing protein 19
3swp_C9e-271510675168NAC domain-containing protein 19
3swp_D9e-271510675168NAC domain-containing protein 19
4dul_A8e-271510672165NAC domain-containing protein 19
4dul_B8e-271510672165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468474.16e-73protein CUP-SHAPED COTYLEDON 3
SwissprotQ84TE61e-41NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A072VLL31e-71A0A072VLL3_MEDTR; NAC transcription factor-like protein
STRINGEOX944245e-69(Theobroma cacao)
STRINGXP_004493788.17e-69(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-60NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]