PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0073s0008.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 306aa    MW: 33399.8 Da    PI: 6.9317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0073s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20159209255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+++g  +r++lg+f+ta +Aaka+++a+ kl+g
  Kaladp0073s0008.1.p 159 HYRGVRRRP-WGKFAAEIRDPNKRG--ARVWLGTFDTAIDAAKAYDRAAFKLRG 209
                          69*******.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.474159217IPR001471AP2/ERF domain
CDDcd000185.80E-30159217No hitNo description
SMARTSM003808.0E-37159223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-32159218IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22159219IPR016177DNA-binding domain
PfamPF008473.4E-14159209IPR001471AP2/ERF domain
PRINTSPR003671.7E-13160171IPR001471AP2/ERF domain
PRINTSPR003671.7E-13199219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MATPSEVSTL EQIKQHLFGG LLSPVNLKSF GSGSGSDSSE SVVTTSTDSP VSFSNYGAFS  60
KLESCNSFEF DQLPNEFFSL ETKFEATGFD FAPEAEVIDL VETSKKKHQI RASKPSRKPS  120
LNISLPDKTE WLDLTQSRTA PPAAVASKPE KAVGGDDLHY RGVRRRPWGK FAAEIRDPNK  180
RGARVWLGTF DTAIDAAKAY DRAAFKLRGS KAILNFPLEI AASCSACDAV GVVDCGRKRR  240
IRDEEVKAEV KKVKAEEEVA KPLTPTSWTA FWDFDETEMR GIFNVPPLSP LSPHPALGLA  300
QLMVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30159220566ATERF1
3gcc_A3e-30159220566ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639103.11e-68ethylene-responsive transcription factor 6-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-38ethylene responsive element binding factor 5