PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0075s0018.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 237aa MW: 26261.3 Da PI: 4.1451

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0075s0018.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.9	1.2e-09	122	166	2	46
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +++k+ +r +NR AA rsR+RKk++++ Le k+ Le+e ++L Kaladp0075s0018.2.p 122 PDSKKRKRQLRNRDAALRSRERKKMYVKDLELKSRYLEGECRRLG 166 689*************************************98664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.6E-12	120	183	No hit	No description
SMART	SM00338	7.2E-7	121	185	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.875	123	165	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	124	167	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.31E-10	125	182	No hit	No description
CDD	cd14704	3.42E-16	126	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSDAGVFDDG FDPELMKLLE DSLSPPEEAS TESAPSWFGE IENMLMNDDA EIDGQLEDDV 60 DPSYVDQFMS DVLLDVPADV AVDGDLLSPS DGKSNQSDLS NFNGGSENET EAAHADANGD 120 DPDSKKRKRQ LRNRDAALRS RERKKMYVKD LELKSRYLEG ECRRLGRLLQ CCYAENQDLR 180 FRLHLGNGAA GAAMTKQESA VLLLGMDLHL FHVIVCSVYI LALCYCEFAS YVNFII*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	144	KRKRQLRNRDAALRSRERKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00019	PBM	Transfer from AT1G42990	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021600280.1	1e-47	bZIP transcription factor 60-like
Swissprot	Q69XV0	1e-30	BZP50_ORYSJ; bZIP transcription factor 50
STRING	XP_002510740.1	2e-46	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	3e-12	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Kaladp0075s0018.2.p

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]