PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0075s0039.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 189aa    MW: 21442.8 Da    PI: 7.3052
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0075s0039.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-15243548
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         T  E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Kaladp0075s0039.2.p  2 TSTEERLVIELHAKWGNR-WSRIARRLP-GRTDNEIKNFWRTHM 43
                         889***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-10145IPR001005SANT/Myb domain
CDDcd001676.16E-11143No hitNo description
PROSITE profilePS5129424.293147IPR017930Myb domain
SuperFamilySSF466891.01E-11247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-19244IPR009057Homeodomain-like
PfamPF002491.1E-13242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTSTEERLVI ELHAKWGNRW SRIARRLPGR TDNEIKNFWR THMRKKAQER KRVNYLSTTS  60
SESESSPSSS NHTQGSRCDS GKESFYDTGG NATVTAMGKK QTDEEGERIK VDDIWKDIDT  120
SKDTITPLND GYNQGLCNYS CTPLVSPLWE FCPDSLWRMD EEDSKMLTPS NNYLLACCEA  180
GKSRLRGS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982154.13e-61PREDICTED: transcription factor MYB48 isoform X2
SwissprotQ9LX822e-42MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A061GXJ91e-58A0A061GXJ9_THECC; Myb domain protein 59 isoform 2
TrEMBLA0A061GY731e-58A0A061GY73_THECC; Myb domain protein 48 isoform 1
STRINGEOY341422e-59(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.26e-45myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]