PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0076s0065.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 359aa MW: 40832.3 Da PI: 6.8711

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0076s0065.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.4	2.3e-11	69	111	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 k +rr+++NReAAr+sR+RKka++++Le +L++ ++L k Kaladp0076s0065.2.p 69 KIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLSQLEQELEK 111 789*************************987777777765554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-5	65	132	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	67	111	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-8	69	111	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.04E-8	69	121	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.7E-9	70	115	No hit	No description
PROSITE pattern	PS00036	0	72	87	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-29	163	236	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGICDPLHLM NTWKDTFVRP QTNINTNDAV LVPVDPLSDS ISNMKGDYSP RESFENLQTN 60 YETRRPPEKI QRRLAQNREA ARKSRLRKKA YVQQLESSRL KLSQLEQELE KARSQAAVLQ 120 GVYLASALDS SHAGLFATVN PGIAAFEMEY AHWVEEQHDQ TLELRTALQA QTISDVELKI 180 LVDTALIHYD NLFRMKGDAA KADVFYLISG MWRTPAERFF LWIGGFRPSE LLNVLMPQLE 240 PLSEQQHQSV SKLRQSSQQA EDALSQGIDR LQQTLSQSIA SQPVGEGRHL SQMVIEIEKL 300 DALENFLNQA DHLRQQTLQH MSRILTTRQA ARGLLALGEY FHRFRTLSSL WAARPLEP*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGICDPLHLM NTWKDTFVRP QTNINTNDAV LVPVDPLSDS ISNMKGDYSP RESFENLQTN  60
YETRRPPEKI QRRLAQNREA ARKSRLRKKA YVQQLESSRL KLSQLEQELE KARSQAAVLQ  120
GVYLASALDS SHAGLFATVN PGIAAFEMEY AHWVEEQHDQ TLELRTALQA QTISDVELKI  180
LVDTALIHYD NLFRMKGDAA KADVFYLISG MWRTPAERFF LWIGGFRPSE LLNVLMPQLE  240
PLSEQQHQSV SKLRQSSQQA EDALSQGIDR LQQTLSQSIA SQPVGEGRHL SQMVIEIEKL  300
DALENFLNQA DHLRQQTLQH MSRILTTRQA ARGLLALGEY FHRFRTLSSL WAARPLEP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002513852.1	1e-162	transcription factor TGA7
Refseq	XP_015571562.1	1e-162	transcription factor TGA7
Swissprot	Q93ZE2	1e-136	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A385ZA14	1e-161	A0A385ZA14_9ROSI; BZIP1 (Fragment)
STRING	XP_002513852.1	1e-162	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-125	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Kaladp0076s0065.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]