PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0076s0114.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 98aa MW: 10444.3 Da PI: 10.7081

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0076s0114.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61	1.3e-19	43	86	3	46
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 e ++n vtfskR+ g++KKA+EL++LC+ae a+++fs+ +k+ Kaladp0076s0114.1.p 43 MEKDTNMLVTFSKRKSGLFKKANELCTLCGAECAMMVFSPADKV 86 58899***********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.81	33	93	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-24	33	92	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.55E-21	34	88	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	35	55	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-20	42	87	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	55	70	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	70	91	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MFAASLEVCI SAGRLGPPSD EAPRNSSGAK KSKGRGKIRM RKMEKDTNML VTFSKRKSGL 60 FKKANELCTL CGAECAMMVF SPADKVSSPS TIRPLTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014511964.2	1e-22	agamous-like MADS-box protein AGL62
Refseq	XP_017414294.1	1e-22	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	1e-21	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A0L9U023	2e-21	A0A0L9U023_PHAAN; Uncharacterized protein
TrEMBL	A0A1S3V1E3	3e-21	A0A1S3V1E3_VIGRR; agamous-like MADS-box protein AGL62
STRING	GLYMA20G27320.1	3e-21	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-19	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Kaladp0076s0114.1.p

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]