PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0076s0258.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 141aa    MW: 15969.5 Da    PI: 10.4192
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0076s0258.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.1e-145791797
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         ++p kf++ + g+   s+  t  ++sg sW+ k+  + ++g+++l+ GW+eF k+n Lk ++++vF+++g+++f  +v++f
  Kaladp0076s0258.1.p  5 TIPPKFVKLIWGE--LSFVATQVSPSGDSWSAKV--CHSKGHVYLKCGWQEFRKDNLLKGNEMLVFTYNGKMRF--HVQIF 79
                         6999999888444..788899999**********..99******************************999999..99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.069182IPR003340B3 DNA binding domain
SMARTSM010191.0E-5182IPR003340B3 DNA binding domain
PfamPF023623.5E-12579IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-16582IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-18582IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-12579No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MPPRTIPPKF VKLIWGELSF VATQVSPSGD SWSAKVCHSK GHVYLKCGWQ EFRKDNLLKG  60
NEMLVFTYNG KMRFHVQIFY ASGVERMQVV VSKPDDKKDS TVQKKKYDEK NDSKTPKRQR  120
GGPRKHPISP PNSGMCLDSL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.12e-11B3 family protein