PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0079s0167.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 648aa    MW: 71346.4 Da    PI: 4.9711
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0079s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.41.9e-09402460155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse...ngkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV+ ++++ r++A+++d s    +g +  kr + g ++ +e+Aa+a++ a++k++g
  Kaladp0079s0167.1.p 402 SRFRGVTKHRWSSRYEAHLWDKSYartDG-QpgKRGRQGGYDKEEKAARAYDLAALKFWG 460
                          789******************66665544.4468888899****************9987 PP
2AP239.71.2e-12505554355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV++  +rg W A+I  +     +  +  +lg+f+t+eeAa+a++ a+ k++g
  Kaladp0079s0167.1.p 505 YRGVSRSNSRGHWQARIARV-----TdeRDLYLGSFDTEEEAAEAYDIAAIKFRG 554
                          9***************9996.....345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-13402470IPR016177DNA-binding domain
PfamPF008473.7E-6402460IPR001471AP2/ERF domain
CDDcd000185.16E-19402470No hitNo description
PROSITE profilePS5103217.385403468IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-10403469IPR001471AP2/ERF domain
SMARTSM003801.1E-19403474IPR001471AP2/ERF domain
PRINTSPR003672.2E-5404415IPR001471AP2/ERF domain
PRINTSPR003672.2E-5450470IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16503563IPR016177DNA-binding domain
CDDcd000186.96E-18503564No hitNo description
PROSITE profilePS5103217.504504562IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-16504563IPR001471AP2/ERF domain
SMARTSM003802.6E-20504568IPR001471AP2/ERF domain
PfamPF008475.7E-7505554IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MDRGESRMIS LSSLTKTNEA AEYQHRFDTS SLSKYPQYPN KNGYEQENQQ AQYPEELIMS  60
APQPESSIKD PRAASNYELA PLPDQLDNFI ELPPMAFETQ QANLCMTDKT YKCALTADST  120
WYLFNSNNND NTGLENELAH AAGMHAMQPS PSPSTGSVTG SNSGFSPENG ADEFVQFLQN  180
NNVVDINNES GASFGWYDEP GSMAGPSHQF FQNNNLASTG FVAWGDSTSL FNPETAGAGF  240
GFNADSVSYM TLPSHFLPNN NLICNYNNNN NNAGLVTGFE YVSLVPETGA DYGFDFDSGY  300
AAGPCDQFLQ NNNLVSNNNN NRLGDYSILN PGDEGDGYFE LGSMAGPSEF LHNNNVYAGN  360
IACNGGSRTT GWEQQLVSAA AYDKNGSLKN LVGVNRLNKK TSRFRGVTKH RWSSRYEAHL  420
WDKSYARTDG QPGKRGRQGG YDKEEKAARA YDLAALKFWG LTAATNFPVS DYIKELNVMH  480
RMSRQQLITS LRRSSAAFSR GASMYRGVSR SNSRGHWQAR IARVTDERDL YLGSFDTEEE  540
AAEAYDIAAI KFRGPFVVTN FELSRYDLRA VAENPIPVGR EAKRMPIMQG SEGRGSTTGI  600
SGSNLVYPSL PSLPPSMIPR TSQMRSSADG GTPESMMETL ERRFPWL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.12e-61AP2 family protein