PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0080s0023.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22528.6 Da    PI: 8.0266
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0080s0023.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.1e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krie+ks rqvtfskR+ g++KKA+ELSvLCd++vav ifss+gk+yeyss
  Kaladp0080s0023.2.p  9 KRIEDKSSRQVTFSKRKSGLMKKANELSVLCDVDVAVFIFSSKGKMYEYSS 59
                         79***********************************************96 PP
2K-box20.22.5e-08871511377
                K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                          + ++++ e a L   i+ ++  +R l     ++L++ eL qL q+Le+ l++ R kK++ + e+ 
  Kaladp0080s0023.2.p  87 TKQKCHAEDAGLSGSINLMRLINRSLDPTTDNPLNVPELTQLDQHLEDLLRHTRFKKEQAMWESA 151
                          45777888888888888888777888888889****************************98864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.894161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-31281IPR002100Transcription factor, MADS-box
CDDcd002651.26E-36273No hitNo description
PRINTSPR004042.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.5288183IPR002487Transcription factor, K-box
PfamPF014869.7E-688155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRGKVELKR IEDKSSRQVT FSKRKSGLMK KANELSVLCD VDVAVFIFSS KGKMYEYSSG  60
SSLKRILEHH QSPFEAENAA RKHVLETKQK CHAEDAGLSG SINLMRLINR SLDPTTDNPL  120
NVPELTQLDQ HLEDLLRHTR FKKEQAMWES ALATVEEEGH SNQRLKHFQG DDEVRVLNEI  180
ESLNCANLKQ RIFCLHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-20187187MEF2 CHIMERA
6byy_B2e-20187187MEF2 CHIMERA
6byy_C2e-20187187MEF2 CHIMERA
6byy_D2e-20187187MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815444.12e-43PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
RefseqXP_021822939.13e-43truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A097SRT15e-42A0A097SRT1_9ROSA; CAULIFLOWER A-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.13e-35AGAMOUS-like 79