PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0080s0141.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 403aa    MW: 45372.5 Da    PI: 6.686
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0080s0141.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.5e-1287143155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Kaladp0080s0141.1.p  87 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 143
                          57*******************99998898888888********************98 PP
2AP2513.6e-16186237155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Kaladp0080s0141.1.p 186 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 237
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-887143IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1587152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-1288152IPR001471AP2/ERF domain
SMARTSM003803.2E-1988157IPR001471AP2/ERF domain
PROSITE profilePS5103218.75588151IPR001471AP2/ERF domain
PRINTSPR003674.9E-689100IPR001471AP2/ERF domain
PfamPF008476.7E-12186237IPR001471AP2/ERF domain
CDDcd000186.54E-24186247No hitNo description
SuperFamilySSF541711.24E-17186247IPR016177DNA-binding domain
PROSITE profilePS5103218.334187245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17187246IPR001471AP2/ERF domain
SMARTSM003801.2E-24187251IPR001471AP2/ERF domain
PRINTSPR003674.9E-6227247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAASPPPLPD LLAFISAPLR IISLIIVEIA LKDLHSSFPF QHSSMAKLSQ QNQTNNNNAN  60
SNNLNGVTKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR YEAHLWDKNC WNESQNKKGR  120
QGAYDDEEAA AHAYDLAALK YWGADTILNF PLATYDKEMK EMEDQSREEY IGSLRRKSSG  180
FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAATAYDM AAIEYRGLNA  240
VTNFDLSRYI KWLRPNHTAD TSSNIIARPN PSTPSSINTN SNLITADAPN PSPEFGFNSN  300
FTVPTPQTTR SSNTASSALG LLLQSSKFKE MMEMSLTADS PMTDESDMPK GRFPDEIQTY  360
FESYDDSNGY EGGEEFMFGE FNSMVAPMFQ CEFEDEIKHL VT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-167AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-167AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A438BTY61e-165A0A438BTY6_VITVI; AP2-like ethylene-responsive transcription factor
STRINGVIT_11s0037g00870.t011e-166(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-92ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]