PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0081s0001.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 276aa    MW: 31274.6 Da    PI: 8.6471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0081s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001224323
                         ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                         Cp   C+ s++rk++L+rH+  H
  Kaladp0081s0001.2.p  2 CPvdGCHSSYRRKDHLTRHLLQH 24
                         9999***************9887 PP
2zf-C2H217.21.4e-056690123
                         EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                         ++C+   Cgk F+  s L++H  +H
  Kaladp0081s0001.2.p 66 HVCQedGCGKAFRFASKLQKHELSH 90
                         789999***************9998 PP
3zf-C2H215.54.8e-05157181223
                          EET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                          kC+   C  +Fs++snL++H +  H
  Kaladp0081s0001.2.p 157 KCNfeGCLHTFSNRSNLQQHVKAvH 181
                          699999**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-6126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.2124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224IPR007087Zinc finger, C2H2
SuperFamilySSF576676.33E-51058No hitNo description
PROSITE profilePS501579.5562957IPR007087Zinc finger, C2H2
SMARTSM00355432952IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.34E-56392No hitNo description
Gene3DG3DSA:3.30.160.609.2E-86390IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.456695IPR007087Zinc finger, C2H2
SMARTSM003550.0236690IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806890IPR007087Zinc finger, C2H2
SMARTSM003555.298123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100123IPR007087Zinc finger, C2H2
SMARTSM0035511126147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-8137178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.18E-8137194No hitNo description
PROSITE profilePS5015710.159156186IPR007087Zinc finger, C2H2
SMARTSM003550.0024156181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158181IPR007087Zinc finger, C2H2
SMARTSM003555187212IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MCPVDGCHSS YRRKDHLTRH LLQHEGNVFK CSNEKCARQF VSQANLTRHK CHEPETPFSG  60
CASKQHVCQE DGCGKAFRFA SKLQKHELSH VKLETMEAIC LETGCLKYFS NEACLKAHMD  120
ACHQHINCEV CGSKQLKKNL KRHLRTHEPG HANEPVKCNF EGCLHTFSNR SNLQQHVKAV  180
HLNIKRFACG YADCGMKFAY KHVRDNHEKT SHHVYTQGDF LESLEHCRVT PCGGRKRKCP  240
SIASVLVKRI TPHPKDSDST ASSMYSAWMN VTNSE*
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278827.11e-114PREDICTED: transcription factor IIIA
SwissprotQ84MZ42e-73TF3A_ARATH; Transcription factor IIIA
TrEMBLD7TQ661e-113D7TQ66_VITVI; Uncharacterized protein
STRINGVIT_08s0040g00240.t011e-113(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.16e-77transcription factor IIIA