PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0081s0031.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 378aa MW: 40950.9 Da PI: 8.3839

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0081s0031.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	5.9e-11	310	355	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq Kaladp0081s0031.1.p 310 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 355 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.024	304	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-14	307	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.29E-11	308	359	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-13	309	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-8	310	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	310	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MFPSSNSSSQ SQQSMAGSSL IRNGSAPGSV LNRAVDSVLN NNSSSNNNAD SHHDFSPFLS 60 PPNFNLPQHH QPAYHQYFSA DSSSISSDSN CKVNNLNHHP ASDPKHSDSK RLQRSGTGLN 120 DFNIDDFSMA ANLKIGEGGG SSSSSPALVR HSSSPAGFLN QLTADLGGFS VPRGSGNYSR 180 GSSSNGPGTS RLKPQLSFTR QDSNMSQLSG ITENIIDGLN QNSGHREAHN YTYANDAWDS 240 GASITFSGPP SKRNKNEEEY LNCFSGLEHQ FSLPQTTLEM ATVEKLLQIP EDSVPCKIRA 300 KRGFATHPRS IAERERRTRI SGKLKKLQDL VPNMDKQTSY ADMLDLAVQH IKGLQNQVQK 360 LNKDMENCTC GCKRSTS*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MFPSSNSSSQ SQQSMAGSSL IRNGSAPGSV LNRAVDSVLN NNSSSNNNAD SHHDFSPFLS  60
PPNFNLPQHH QPAYHQYFSA DSSSISSDSN CKVNNLNHHP ASDPKHSDSK RLQRSGTGLN  120
DFNIDDFSMA ANLKIGEGGG SSSSSPALVR HSSSPAGFLN QLTADLGGFS VPRGSGNYSR  180
GSSSNGPGTS RLKPQLSFTR QDSNMSQLSG ITENIIDGLN QNSGHREAHN YTYANDAWDS  240
GASITFSGPP SKRNKNEEEY LNCFSGLEHQ FSLPQTTLEM ATVEKLLQIP EDSVPCKIRA  300
KRGFATHPRS IAERERRTRI SGKLKKLQDL VPNMDKQTSY ADMLDLAVQH IKGLQNQVQK  360
LNKDMENCTC GCKRSTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010650469.1	1e-125	PREDICTED: transcription factor bHLH128 isoform X2
Swissprot	Q8H102	5e-78	BH128_ARATH; Transcription factor bHLH128
TrEMBL	F6I3R9	1e-124	F6I3R9_VITVI; Uncharacterized protein
STRING	VIT_05s0124g00240.t01	1e-125	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	1e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0081s0031.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]