PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0081s0037.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 462aa    MW: 50784.2 Da    PI: 7.0965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0081s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09281328455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Kaladp0081s0037.1.p 281 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 328
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.26E-11275332No hitNo description
SuperFamilySSF474593.27E-17275346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17277348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-6281328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEKELFPWTQ NQNPATYCSP DMSFYTTTSN SNWDHSLDQF ESALSSMVSS PAASATPASA  60
SAGVHLIELI GKLGTISSHS YIPNHIHSAD NSCYTTPINS PPKLNLDQMP AFATDPGFAE  120
RAARFSCFGS RSFNGRIGGS LFPDSDMAYN NTQLDGSAKY FPGSASHLDG VHIQDTTTTN  180
TNNKLPSDSK EESSVSQKVQ SNEAMGRKRK SAPRGKPKET QSSKAAMESN DSDSKRTKSD  240
ENEKGRKSGG HQKQSKDNSK PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL  300
QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMDSVHM EALLSKEILQ  360
SRTTLYPVES SNSASAAFPY AYQTQDPSRL PNATTDSQFC NNSLNNDHLR QSHHHGLQLP  420
SVDGFCNSAT QVSMWEDELH NVVQMGFGAG SMEPSQMKME P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264969.21e-135PREDICTED: transcription factor bHLH77
TrEMBLA0A438CKQ41e-134A0A438CKQ4_VITVI; Transcription factor bHLH62
STRINGVIT_05s0029g00390.t011e-132(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-85bHLH family protein