PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0081s0037.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 335aa MW: 36641.5 Da PI: 8.5879

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0081s0037.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.6e-09	281	328	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Kaladp0081s0037.2.p 281 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 328 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.10E-11	275	332	No hit	No description
SuperFamily	SSF47459	2.62E-15	275	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	277	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	277	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-6	281	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-10	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MEKELFPWTQ NQNPATYCSP DMSFYTTTSN SNWDHSLDQF ESALSSMVSS PAASATPASA 60 SAGVHLIELI GKLGTISSHS YIPNHIHSAD NSCYTTPINS PPKLNLDQMP AFATDPGFAE 120 RAARFSCFGS RSFNGRIGGS LFPDSDMAYN NTQLDGSAKY FPGSASHLDG VHIQDTTTTN 180 TNNKLPSDSK EESSVSQKVQ SNEAMGRKRK SAPRGKPKET QSSKAAMESN DSDSKRTKSD 240 ENEKGRKSGG HQKQSKDNSK PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL 300 QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632246.1	9e-93	transcription factor bHLH62-like
Swissprot	Q9SRT2	1e-71	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A2P5FCM5	9e-99	A0A2P5FCM5_TREOI; Basic helix-loop-helix transcription factor
STRING	cassava4.1_004576m	3e-92	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-67	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kaladp0081s0037.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]