PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0081s0271.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 322aa    MW: 36958.5 Da    PI: 4.697
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0081s0271.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind773.3e-2437025101
                          SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
         HSF_DNA-bind  25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                           nsf+v+d  ef+  vLpkyFkh+nf+SF+RQLn+YgF+kv+ ++          eF+++sF  g+++ll++ikr++
  Kaladp0081s0271.1.p   3 RNSFIVWDYIEFSAVVLPKYFKHNNFSSFIRQLNTYGFRKVDPDR---------YEFANESFLGGQRHLLRTIKRRR 70 
                          58*****************************************99.........78*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.7E-26169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-24269IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-21369IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-20369IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-101830IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401943IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-103143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
EARNSFIVWD YIEFSAVVLP KYFKHNNFSS FIRQLNTYGF RKVDPDRYEF ANESFLGGQR  60
HLLRTIKRRR HVGLSSQLQG VVGVSGLEGF EDEIGILKRQ RRMLLTEVLR LKQQQLDAKE  120
HMVGMQERLL RTEKKQQQIA SFLSRVVSNP SILDQFLEGT AKRSALVYGV ENRKKQKLTA  180
SCSSDNMQDV VTSALGVSDG VGFSSQYQAE ELMNIESEME SLFSYGMEND LNNEIGYLKL  240
DTFLEEDAGD ENWDYVTEAI WDDLPSKEVI NWTKYYSLDI HSRDQVDMKV PVEDLVSPIE  300
LELGEDVQDL AGQLNYLDRS H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-1646953129Heat shock factor protein 1
5d5v_B4e-1646953129Heat shock factor protein 1
5d5v_D4e-1646953129Heat shock factor protein 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-65heat shock transcription factor A2