PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0081s0379.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LFY
Protein Properties Length: 396aa    MW: 44137.9 Da    PI: 7.3103
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0081s0379.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY598.91.1e-18213811386
              FLO_LFY   1 mdpeafsaslfkwdpraaa...aapparlleeaavse.....apleaaaaaaark.lr.....eleelfkayGvryltvakiaelGftvs 76 
                          mdp+af+asl+kwdpr +a   +++p r+++e+++       +p  + ++aa ++ +r     elee+f ayGvry+t+akiaelGftvs
  Kaladp0081s0379.1.p   1 MDPDAFTASLYKWDPRGVAglaQHQP-RIVMEQVAGGggmvlPP-PQPVVAAGYSvVRpremgELEEMFGAYGVRYYTAAKIAELGFTVS 88 
                          9**************99987643344.33333333221222122.222222233223344555*************************** PP

              FLO_LFY  77 tLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll.sedeetaldalsqeg.lseepvqeekeaagsg 164
                          tLvdmk+eeldd+m+sls+ifr++l+vGeryGikaavraerrrl+ee+   +rr+ll s+ ++++ldalsqe+ lseepvq+ekeaagsg
  Kaladp0081s0379.1.p  89 TLVDMKEEELDDMMNSLSQIFRWELMVGERYGIKAAVRAERRRLDEED--LQRRNLLhSAATNATLDALSQEAgLSEEPVQQEKEAAGSG 176
                          **********************************************88..555556626666669*******55***************9 PP

              FLO_LFY 165 geglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfd 254
                          g  + +a++++         + k+     ++k  ++++++ed d      e+++++ e+  erqrehPfivtepgevargkknGLDYLf+
  Kaladp0081s0379.1.p 177 GVWEVAAGATGGG-------RLKQ----VRKKGPRKMSAREDLD------ENDDDTEEGFCERQREHPFIVTEPGEVARGKKNGLDYLFH 249
                          8775555555444.......2222....2233333322222222......222233444579**************************** PP

              FLO_LFY 255 LyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykpl 344
                          LyeqCrefL+qvq+iak+rGekcP+kvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrr+fkerg nvGawrqacykpl
  Kaladp0081s0379.1.p 250 LYEQCREFLIQVQSIAKDRGEKCPSKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRSFKERGGNVGAWRQACYKPL 339
                          ****************************************************************************************** PP

              FLO_LFY 345 vaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                          v iaarqgwdida+f++hprL+iWYvPtkLrqLCh++rs+as
  Kaladp0081s0379.1.p 340 VLIAARQGWDIDAIFSSHPRLAIWYVPTKLRQLCHAQRSSAS 381
                          ***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016987.4E-1941380IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDPDAFTASL YKWDPRGVAG LAQHQPRIVM EQVAGGGGMV LPPPQPVVAA GYSVVRPREM  60
GELEEMFGAY GVRYYTAAKI AELGFTVSTL VDMKEEELDD MMNSLSQIFR WELMVGERYG  120
IKAAVRAERR RLDEEDLQRR NLLHSAATNA TLDALSQEAG LSEEPVQQEK EAAGSGGVWE  180
VAAGATGGGR LKQVRKKGPR KMSAREDLDE NDDDTEEGFC ERQREHPFIV TEPGEVARGK  240
KNGLDYLFHL YEQCREFLIQ VQSIAKDRGE KCPSKVTNQV FRYAKKAGAS YINKPKMRHY  300
VHCYALHCLD EEASNALRRS FKERGGNVGA WRQACYKPLV LIAARQGWDI DAIFSSHPRL  360
AIWYVPTKLR QLCHAQRSSA SASSSVSGGT EHLHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1072213794162PROTEIN LEAFY
2vy2_A1e-1072213794162PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902312.10.0floricaula/leafy homolog
SwissprotO485590.0UNI_PEA; Protein UNIFOLIATA
TrEMBLM1L3050.0M1L305_9ROSI; LEAFY-like protein
STRINGXP_006485166.10.0(Citrus sinensis)
STRINGXP_006436969.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-148floral meristem identity control protein LEAFY (LFY)