PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0082s0118.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 243aa    MW: 26514.2 Da    PI: 8.4696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0082s0118.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19128178255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Kaladp0082s0118.1.p 128 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAFQMRG 178
                          8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.55E-30127186No hitNo description
Gene3DG3DSA:3.30.730.107.1E-32127186IPR001471AP2/ERF domain
PROSITE profilePS5103224.434128186IPR001471AP2/ERF domain
PfamPF008473.7E-14128178IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-23128188IPR016177DNA-binding domain
SMARTSM003801.7E-38128192IPR001471AP2/ERF domain
PRINTSPR003671.3E-10129140IPR001471AP2/ERF domain
PRINTSPR003671.3E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MCDQVCSEND LAFLESIRRH LLDDSEIPMM FPTPGSSAAA AAAPRYARTS SFSSLFTENW  60
GELPLKENDS EDMVLFGVLR DAASAGWIPC LTPNKQGMMG VKAEPVVENG REGGVVVMPV  120
VVPAKGKHYR GVRRRPWGKF AAEIRDPAKN GARVWLGTYE TAEDAALAYD RAAFQMRGSR  180
ALLNFPLRIN SGEPAPVRIT AKRNSPEPSS SSESMASPKR MRKEVKKEEV SIWTGGDQLL  240
VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-42124193170ATERF1
3gcc_A2e-42124193170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437026.23e-86PREDICTED: ethylene-responsive transcription factor 1A-like
SwissprotO803375e-74EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0F6RA579e-85A0A0F6RA57_9ROSI; Ethylene response factor 1-like protein ERF1-2
TrEMBLA0A1S3AT638e-85A0A1S3AT63_CUCME; ethylene-responsive transcription factor 1A-like
STRINGXP_008437026.16e-85(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-62ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]