PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0083s0049.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 350aa    MW: 38788.3 Da    PI: 4.3836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0083s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.72.2e-111055550
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         ++s+++v fsk   ++ K  +EL +LCd+++++i+  ++++ y+++
  Kaladp0083s0049.1.p 10 DNSKKTVDFSKKASTLNKQIYELTTLCDVDACLILRTPHNQTYTWP 55
                         67899****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.8061058IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-121080IPR002100Transcription factor, MADS-box
PfamPF003197.8E-111054IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKQLGHHNAD NSKKTVDFSK KASTLNKQIY ELTTLCDVDA CLILRTPHNQ TYTWPESADQ  60
VRRVVGLFKS KAGTTTGKIA RDVTSDERRL KDMPTAQAED LLKRLEERIE ALTAKIANAE  120
VGNDITKIGS NPDETLRGEI MKRFSFQEKL KELTAGQAMS LSSELDAKIE ALTTKIDNGE  180
GRHAKSIIAG NNDKGMNPAV DMDCSADNDD SWTTRGYYEY EEYNAAASDA HMDDALALQP  240
TTTTSTCWVE LESDFLIDSM VPNPWFETSD MRSLCYGSME MEPSSAPPVV DSQKESSAAE  300
TIFDDLGPIL TDTTMRTMSF WDGCLEVDGE TQLQQQQPLS PIQNHLLFT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.17e-09AGAMOUS-like 86