PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0083s0068.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 223aa    MW: 24284 Da    PI: 4.94
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0083s0068.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.11.1e-3671071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+ pyf  ++ + +fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA ar+ dPv G+v++i +l+qq+++
  Kaladp0083s0068.1.p   7 SCGACKFLRRKCTSECVFVPYFSYDEaATHFAAVHKVFGASNVSKLLMHIPVQHRSEAAVTISYEALARMTDPVFGCVAHIYALHQQIAN 96 
                          6**********************988689************************************************************* PP

               DUF260  90 lkaelallkee 100
                          l++e++ll+++
  Kaladp0083s0068.1.p  97 LQEEIDLLGSQ 107
                          *****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4986108IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-357104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MTGQGSSCGA CKFLRRKCTS ECVFVPYFSY DEAATHFAAV HKVFGASNVS KLLMHIPVQH  60
RSEAAVTISY EALARMTDPV FGCVAHIYAL HQQIANLQEE IDLLGSQMAA GFPFTFPGSQ  120
PATENLSTNQ EAFNLQQQMG HHQQAQDIVN AGYGNGAADQ SYVNQFQQLP PVWGGEAHSG  180
NYDNYLNGEI NEGLDHEPLL CCQFLNNNGN ITEIPNNAVL GW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3231087111LOB family transfactor Ramosa2.1
5ly0_B1e-3231087111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067432.13e-67PREDICTED: LOB domain-containing protein 29
RefseqXP_021625564.12e-67LOB domain-containing protein 33-like
TrEMBLA0A059BH536e-66A0A059BH53_EUCGR; Uncharacterized protein
TrEMBLA0A2C9V4S74e-66A0A2C9V4S7_MANES; Uncharacterized protein
STRINGcassava4.1_027792m7e-67(Manihot esculenta)
STRINGXP_010067432.11e-66(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-57LOB domain-containing protein 33