PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0083s0071.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 237aa    MW: 26469 Da    PI: 8.3726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0083s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-057799123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Kaladp0083s0071.1.p 77 YTCSFCRREFKSAQALGGHMNVH 99
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-674103No hitNo description
PfamPF139121.7E-577100IPR007087Zinc finger, C2H2
SMARTSM003550.00527799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15777104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDGHNMIEQA ESKYVMWMNR KQELMPSQLF TSSMVRAGRA AAAVASTYEQ YESWEERAFA  60
EDAARGLGGF IWPPRSYTCS FCRREFKSAQ ALGGHMNVHR RDRARLKQAL SPRRSDTKAD  120
FSPQQQTTSI VTSSEESTKV AVGGGDLLNK QERPCVLKSS GQEKEYDVST RLCMGLSLDE  180
VAKCKKLKSA SFVWVEPCLA VVQSSPSNHH DARQHGLIQS KMSLMEELDL ELRLGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-137299229superman protein
2l1o_A2e-137299229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-28zinc-finger protein 10