PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0083s0081.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 308aa MW: 35972.6 Da PI: 8.3065

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0083s0081.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.3e-22	54	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFs+r++k+++++ + + +r+fvCske +++ +k++ k++ +r+ trtgC+a ++ + +++g++ +++ e eH+H+++ Kaladp0083s0081.1.p 54 LYNDYARRIGFSIRRAKQRYRRGESRLSMRQFVCSKERTKNAKKES--KRSYSRNITRTGCQAFIRFSIDQEGRYTIQRHEMEHTHDFS 140 6***********************************99999888..9999********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.5E-19	54	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-8	263	306	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MADMSTFKKP DMLESEVPET SDESIRNQRA KFFEAKNSEL IGFVVESEEV AYALYNDYAR 60 RIGFSIRRAK QRYRRGESRL SMRQFVCSKE RTKNAKKESK RSYSRNITRT GCQAFIRFSI 120 DQEGRYTIQR HEMEHTHDFS DIRQRHLMRS QRSISDEQIE LLKSFRKCGI KLSDAIRFLK 180 CQCGGSPNIG FINIDAYNAL ANPDCKTFNG SDAKTLIEIF KERQKNEDDF FYNFDLDEDG 240 RLCGFFFRDG IMKKDYDLFG DLVVHDTTYR TNKYDMICGP FVGMNQHTNN VMFGCGFIIN 300 ERVESFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185064.1	1e-102	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-46	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0083s0081.1.p